Document › Details

Roche. (10/29/09). "Press Release: Norwegian Team Completes Cod Genome Using 454 Sequencing System". Branford, CT.

Organisation Organisation 454 Life Sciences Corporation
  Group Roche (Group)
Products Product genome sequencing
  Product 2 GS FLX System (Genome Sequencer FLX System)
     


Scientists from a consortium of Norwegian marine and aquaculture institutions announced this week that they have generated the first ever draft sequence and assembly of the Atlantic cod genome. The results, presented at the GenoFisk meeting in Oslo, Norway, include a high-quality genome assembly and preliminary annotation of the fish species, completed using only whole genome shotgun and paired-end data generated by the Genome Sequencer FLX System from 454 Life Sciences, a Roche Company (SIX: RO, ROG; OTCQX: RHHBY). By using the long-read GS FLX Titanium Series and the system's accompanying GS Assembler software, the consortium was able to produce a draft assembly at a fraction of the time and cost of traditional sequencing methods. The researchers hope to use this information and the fully annotated genome to identify genes and genetic variations underlying important traits for cod aquaculture.

The cod farming industry is of growing importance in northern latitude countries such as Norway due to the fish's high demand, declining wild stock, and relatively fast growth at low temperatures. In 2008, the Norwegian Centre for Ecological and Evolutionary Synthesis (CEES) was awarded the funds to complete the sequencing of the 0.9 Gb cod genome and the consortium turned to 454 Life Science to take on the project.

"The cod is a large and complex eukaryote with a number of highly repetitive regions in its genome. We understood the value of long 400-base sequencing reads to get the quality of assembly required to achieve our research goals. In the end, we were able to generate 25x genome coverage and an assembly with few, large scaffolds, a major achievement given the diploid and non-inbred nature of our DNA source," explained Kjetill Jakobsen, Professor at the University of Oslo and consortium leader. "A preliminary transcriptome survey revealed that 95% of all sequenced transcripts are found in the current version of the assembly, confirming the quality of these results. With this project, we have made significant steps towards the creation of a highly annotated reference genome that can be mined for genes and genetic variations associated with important traits for cod aquaculture."

In the next phase of the project, the consortium plans to continue to sequence the cod transcriptome using the Genome Sequencer FLX System for genome annotation and to investigate specimens from various wild cod stocks. "In these follow-up studies we will be searching for SNP and traits relevant to aquaculture, such as sexual maturity, temperature tolerance, oxygen uptake, as well as fishery related traits such as growth in response to harvesting," explained Jakobsen. "Previous studies have shown that if the large cod are harvested from a population of fish, the subsequent offspring population tends to grow smaller. We plan to explore the genetic basis of this evolutionary response."

"This study, along with other recently announced large genome project such as the oil palm, demonstrate that the technology of the 454 Sequencing System has effectively replaced Sanger technology for de novo genome sequencing and assembly," said Christopher McLeod, President and CEO of 454 Life Sciences. "We are extremely excited to continue to work with the cod genome consortium to analyze this important fish species."

For more information on the 454 Sequencing System, visit www.454.com.

About Roche

Headquartered in Basel, Switzerland, Roche is a leader in research-focused healthcare with combined strengths in pharmaceuticals and diagnostics. Roche is the world's largest biotech company with truly differentiated medicines in oncology, virology, inflammation, metabolism and CNS. Roche is also the world leader in in-vitro diagnostics, tissue-based cancer diagnostics and a pioneer in diabetes management. Roche's personalised healthcare strategy aims at providing medicines and diagnostic tools that enable tangible improvements in the health, quality of life and survival of patients.

In 2008, Roche had over 80,000 employees worldwide and invested almost 9 billion Swiss francs in R&D. The Group posted sales of 45.6 billion Swiss francs. Genentech, United States, is a wholly owned member of the Roche Group. Roche has a majority stake in Chugai Pharmaceutical, Japan. For more information: www.roche.com.

All products are sold for life science research use only. Not for use in diagnostic procedures.
454, 454 SEQUENCING, 454 LIFE SCIENCES, GS FLX TITANIUM are trademarks of Roche.

   
Record changed: 2015-08-10

Advertisement

[iito] Business Intelligence – The Elephants Are Coming 560x91px

More documents for University of Oslo


To subscribe to our free, monthly newsletter for the European life sciences, please send an e-mail to info@iito.de and simply fill the subject line with the word »LSE Newsletter«

To get even more information, please take a look at our [gs] professional services offering and read the gene-sensor Product Flyer [PDF file]

Please visit also our web portals for the European life sciences and the worldwide mass spectrometry industry at Life-Sciences-Europe.com (European life sciences) and Mass-Spec-Capital.com (worldwide mass spectrometry)

Please visit also our web portals for the life sciences in German-speaking Europe (DE, AT & CH) and the worldwide mass spectrometry industry at Life-Sciences-Germany.com (life sciences in German-speaking Europe) and Mass-Spec-Capital.com (worldwide mass spectrometry)

Advertisement

Picture [LSE] Life-Sciences-Europe.com – The Business Web Portal 600x60px




» top